Glimma: interactive graphics for gene expression analysis

Glimma: interactive graphics for gene expression analysis

Motivation graphics for RNA-sequencing and microarray gene expression analyses may contain upwards of tens of thousands of points. Details about certain genes or samples of interest are easily obscured in such dense summary displays. Incorporating interactivity into summary plots would enable additional information to be displayed on demand and facilitate intuitive data exploration. Results T...

Glimma: Interactive Graphics for RNA-seq Analyses User’s Guide

Three-dimensional structural analysis using Interactive Graphics

-Three-dimensional finite element structural analysis computer programs can only be used effectively when the input can be accurately generated and checked, and the output correctly examined. With the use of the Sandia Interactive Graphics System, SIGS, which consists of a cathode ray tube, a mini-computer, a CDC 6600 computer and an interactive graphics computer software system, both input and...

Interactive Platform for Semantic Gene Expression Analysis of Alzheimer's Disease

In the course of gene expression analysis, it is required to interpret data by referencing knowledge bases of genetics, pathways, diseases and drugs. However, because those external resources are often stored in distributed databases in various formats, it is hard for biomedical scientists to use them in combination. Semantic Web technologies are suitable for integration of those heterogeneous ...

Interactive Visualization and Analysis for Gene Expression Data

New technology such as DNA microarray can be used to produce the expression levels of thousands of genes simultaneously. The raw microarray data are images which can be transformed into gene expression matrices where usually the rows represent genes, the columns represent various samples, and the number in each cell characterizes the expression level of the particular gene in a particular sampl...